refactor: route startup and cli settings through runtime

app/cli.py

@@ -15,7 +15,10 @@ from urllib.request import ProxyHandler, Request, build_opener, urlopen
 import click
 import psutil
 
-from app.runtime.config import Settings, settings
+from app.runtime.config import Settings
+from app.runtime.settings import RuntimeSettingsCompat
+
+settings = RuntimeSettingsCompat()
 from app.runtime.state import SystemHelper
 from app.application.backup import BackupArtifact
 from app.startup.database import build_database_governance

app/doctor/checks.py

@@ -20,7 +20,9 @@ import psutil
 
 from app.adapters.system.backup.database import verify_database_backup
 from app.adapters.system.backup.files import BackupFiles
-from app.runtime.config import settings
+from app.runtime.settings import RuntimeSettingsCompat
+
+settings = RuntimeSettingsCompat()
 from app.runtime.topology import process_topology_issue
 from app.doctor.models import DoctorFinding, DoctorFindingStatus, DoctorReport, DoctorSeverity
 from app.adapters.system.host import SystemUtils

app/doctor/runner.py

@@ -6,7 +6,9 @@ import sys
 from datetime import datetime
 from typing import Any, Optional
 
-from app.runtime.config import settings
+from app.runtime.settings import RuntimeSettingsCompat
+
+settings = RuntimeSettingsCompat()
 from app.doctor.checks import default_checks
 from app.doctor.models import (
     DoctorFinding,

app/factory.py

@@ -21,7 +21,9 @@ from app.adapters.web.security.access import (
 )
 from app.application.security.token import create_access_token, decode_access_token
 from app.runtime.extensions.plugin_manager import PluginManager
-from app.runtime.config import settings
+from app.runtime.settings import RuntimeSettingsCompat
+
+settings = RuntimeSettingsCompat()
 from app.runtime.correlation import get_correlation_id
 from app.runtime.localization import LocaleHelper
 from app.runtime.log import configure_correlation_id_provider, logger

app/main.py

@@ -55,7 +55,10 @@ elif SystemUtils.is_frozen():
     sys.stderr = open(os.devnull, 'w')
 
 from app.factory import app
-from app.runtime.config import global_vars, settings
+from app.runtime.config import global_vars
+from app.runtime.settings import RuntimeSettingsCompat
+
+settings = RuntimeSettingsCompat()
 from app.runtime.topology import (
     UnsupportedProcessTopologyError,
     validate_process_topology,